HIBLUP supports user-defined windows to cut the genome for several analysis, e.g., LD and LD score calculation, SBLUP model fitting. Three columns are required as follows:
chr start stop 1 10583 1577084 1 1577084 2364990 1 2364990 3150345 1 3150345 4284187 1 4284187 4854314 2 10133 341834 2 341834 1161563 2 1161563 1688845 2 1688845 2829810 2 2829810 3389305
Note that the windows should be non-overlapped.
This file should be assigned to the parametric option --window-file.