跳至正文
首页 » Homozygosity and Heterozygosity

Homozygosity and Heterozygosity

The homozygosity and heterozygosity are defined as the proportion of homozygous and heterozygous of an individual, it can be easily obtained from HIBLUP by using the flag

--homo
--homo and
--hete
--hete, respectively.

Homozygosity

Plain text
Copy to clipboard
Open code in new window
EnlighterJS 3 Syntax Highlighter
./hiblup --bfile demo --homo --out demo
./hiblup --bfile demo --homo --out demo
./hiblup --bfile demo --homo --out demo

A file named

demo.homo
demo.homo will be generated as following:

Plain text
Copy to clipboard
Open code in new window
EnlighterJS 3 Syntax Highlighter
id a1a1 a2a2
IND0701 0.42255 0.201235
IND0702 0.415291 0.204923
IND0703 0.426455 0.199282
id a1a1 a2a2 IND0701 0.42255 0.201235 IND0702 0.415291 0.204923 IND0703 0.426455 0.199282
id         a1a1      a2a2
IND0701  0.42255   0.201235
IND0702  0.415291  0.204923
IND0703  0.426455  0.199282

Heterozygosity

Plain text
Copy to clipboard
Open code in new window
EnlighterJS 3 Syntax Highlighter
./hiblup --bfile demo --hete --out demo
./hiblup --bfile demo --hete --out demo
./hiblup --bfile demo --hete --out demo

A file named

demo.hete
demo.hete will be generated as following:

Plain text
Copy to clipboard
Open code in new window
EnlighterJS 3 Syntax Highlighter
id a1a2
IND0701 0.376216
IND0702 0.379786
IND0703 0.374263
id a1a2 IND0701 0.376216 IND0702 0.379786 IND0703 0.374263
id       a1a2
IND0701  0.376216
IND0702  0.379786
IND0703  0.374263